rs234362938 SNP Detail

Summary

• ID
  rs234362938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131648520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGTCCAGC ACTGGCAGTC
  CCCTGCCTCC AGCCCCGGCT CTAGCCCGGC CGTGGGGGGA GGGGGAGGCC TCTTCTGGAG
  GAGTGGAGAA GAATCCTGGA CAAAGTCCGC CGTTGCCTCC TCTGCTCTGA CTGGCTGGTC
  TCGGCCAGAG CGGTTTTTCC CAGAGTCTAG CTCAAGTCTC TCCTGCTGCA GCTCCAGTGC
  Y
  GGCTGAGGAA GTCTGCAAGG AGGGGGCGAG CAAGGAGAAG CCGGAGTCAG AGACACCTCC
  GCCGGCCCTC GCTGCGGTAT GTAAAGCGCA GTAAGGGGGA GGTGGGGCGC GCGCGCGCGA
  GCCCCGCAGC CCCGGGCGAT CCGAGTACCC CCTCCCCTGG TTACTTCGGG GCGGCCACGT
  GCGGGGGGTG GGGTCGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329101	CHEV_4_131477124	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234362938					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131648520 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	within coordinates
Gm12992	predicted gene 12992	1180 bp upstream
Gm50475	predicted gene, 50475	within coordinates
Rr100128	regulatory region 100128	within coordinates
Tmem200b	transmembrane protein 200B	within coordinates
Tssr1320	transcription start site region 1320	481 bp upstream
Tssr39357	transcription start site region 39357	609 bp downstream
Tssr39358	transcription start site region 39358	49 bp downstream
Tssr39359	transcription start site region 39359	2 bp downstream
Tssr43616	transcription start site region 43616	502 bp upstream
Tssr43617	transcription start site region 43617	187 bp upstream