rs234364767 SNP Detail

Summary

• ID
  rs234364767
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115568405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGCCCCGC CCCGGGGACC
  CCGAGAGCGC AGCACGCTCG GCGAGCGCGC ACGGCCCGGC GCGGGTTGGG GAGCAGTTGT
  GGGGGGTGGG GGGCGGGTTG AGGGGGCATC GGGGGGGGCG GGCTGGGCCC CCGGGACCCG
  CCAGCGGCAG CTCCAACTCC GCTCGCACCT GCGGCTCAAA CTTTTGTTGA GGCTGCTCCC
  R
  GAGCGGCGGG AACCCAACCT GAGCGGTCCC CTACTCCAGC CCGGCCCCGG CCCTTGCCTT
  GCCGAGGCCC CGGTGGGCGC CAGGAAGGCT CTGCGGGACC CCCCTCCCCA ATCCCCGGCG
  AGGGCAGGGG TGGGGGGGCC GGCCGCGGAG AGTGCGCGCG GGCAGCTCGG CGCGGGGGCG
  GCGGGGCCGC GCCGGGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss366356343	MGP_WTSI_5_115880355	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs234364767					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366356343	MGP_WTSI_5_115880355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115568405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	within coordinates
Gm43231	predicted gene 43231	871 bp upstream
Msi1	musashi RNA-binding protein 1	within coordinates
Rr618242	regulatory region 618242	853 bp distal
Rr618243	regulatory region 618243	737 bp distal
Rr618244	regulatory region 618244	1214 bp proximal
Tssr48228	transcription start site region 48228	829 bp downstream
Tssr48229	transcription start site region 48229	811 bp downstream
Tssr48230	transcription start site region 48230	778 bp downstream
Tssr48231	transcription start site region 48231	733 bp downstream
Tssr48232	transcription start site region 48232	663 bp downstream
Tssr48233	transcription start site region 48233	639 bp downstream
Tssr48234	transcription start site region 48234	612 bp downstream
Tssr48235	transcription start site region 48235	576 bp downstream
Tssr48236	transcription start site region 48236	354 bp downstream
Tssr48237	transcription start site region 48237	10 bp downstream
Tssr48238	transcription start site region 48238	234 bp upstream
Tssr48239	transcription start site region 48239	1013 bp upstream
Tssr48240	transcription start site region 48240	1661 bp upstream
Tssr48241	transcription start site region 48241	1674 bp upstream
Tssr52797	transcription start site region 52797	837 bp upstream