rs234377831 SNP Detail

Summary

• ID
  rs234377831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135145264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCA CCCTCTCGCC CTCTCTGGGG
  Y
  GAAGCGCGGA TCTCGGTAGC TGGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320971813	CHEV_3_135102467	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234377831					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135145264 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			838 bp upstream
Cpgi13855	CpG island 13855			within coordinates
Rr367562	regulatory region 367562			1203 bp downstream
Rr367563	regulatory region 367563			1059 bp downstream
Rr398041	regulatory region 398041			672 bp upstream
Rr585708	regulatory region 585708			1463 bp distal
Rr585709	regulatory region 585709			1259 bp distal
Rr585710	regulatory region 585710			928 bp distal
Rr585711	regulatory region 585711			282 bp distal
Rr585712	regulatory region 585712			137 bp distal
Rr585713	regulatory region 585713			within coordinates
Rr585714	regulatory region 585714			1365 bp proximal
Tssr1058	transcription start site region 1058			759 bp downstream
Tssr31809	transcription start site region 31809			1377 bp downstream
Tssr31810	transcription start site region 31810			1350 bp downstream
Tssr31811	transcription start site region 31811			1200 bp downstream
Tssr31812	transcription start site region 31812			1113 bp downstream
Tssr31813	transcription start site region 31813			1051 bp downstream
Tssr31814	transcription start site region 31814			1018 bp downstream
Tssr31815	transcription start site region 31815			963 bp downstream
Tssr31816	transcription start site region 31816			919 bp downstream
Tssr31817	transcription start site region 31817			723 bp downstream
Tssr31818	transcription start site region 31818			450 bp downstream
Tssr31819	transcription start site region 31819			440 bp downstream
Tssr31820	transcription start site region 31820			405 bp downstream
Tssr31821	transcription start site region 31821			329 bp downstream
Tssr31822	transcription start site region 31822			63 bp downstream
Tssr31823	transcription start site region 31823			34 bp downstream
Tssr31824	transcription start site region 31824			3 bp downstream
Tssr35782	transcription start site region 35782			1497 bp upstream
Tssr35783	transcription start site region 35783			865 bp upstream
Tssr35784	transcription start site region 35784			798 bp upstream
Tssr35785	transcription start site region 35785			868 bp downstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant