rs234388394 SNP Detail

Summary

• ID
  rs234388394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32877189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTGTAGC AAAGGAACTA
  AGACTCTTAC CTCTGCCTGG TTATGTCTTC ATTCTTTCAC AAAAGTAATG GAAAGCACAG
  TCTAAGTGCT GGCCACAGCT GGTCAAATAG GAAAGGCATG GTCTGCATGT GCATCTTCAT
  ACTAAAGTAC ATTGATGTCT CACAAGCAGA CATGTGGTCT TTTACTAGGC ACCAAGGTTG
  R
  TGATATACAG CTTTTTAAAA AATGTATAAT AACCAATGTA CAGAATAGTA AACATTATTT
  TAAATGCTGT CCATTTTTCA CAGAAGAACA AGAAGGGCCC TGACCTGTTC TGCCTGGATC
  CCATCTGCTG CTAGCCCATC TTAGCCTTGC TCTCACATAC CTTCCCTCCT CACTCCATAT
  CCTAGCCCAG CCCAGCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325362703	CHEV_17_32795160	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234388394					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32877189 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	685 bp upstream
Gm65897	predicted gene, 65897	within coordinates
Rr525786	regulatory region 525786	within coordinates
Rr525787	regulatory region 525787	456 bp proximal
Rr525788	regulatory region 525788	696 bp proximal
Tssr143725	transcription start site region 143725	663 bp upstream
Tssr143726	transcription start site region 143726	751 bp upstream
Tssr143727	transcription start site region 143727	774 bp upstream
Tssr143728	transcription start site region 143728	794 bp upstream
Tssr143729	transcription start site region 143729	806 bp upstream
Tssr143730	transcription start site region 143730	829 bp upstream
Tssr143731	transcription start site region 143731	851 bp upstream
Tssr143732	transcription start site region 143732	865 bp upstream