rs234399123 SNP Detail

Summary

• ID
  rs234399123
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116355451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCCCTAC TCTCCCCCTT
  CTCCTTTCCC CCCTGAGGGC CTATAAAACC TGGGACCCCT GTCCCCTCGG GGTTGACTCC
  TCTACCCCTG CGTGAGATAT GAGTCGTCCC CAGAGCTCTG GTTTTCCCGA ATAAAGCCTC
  CTGTGGTTTG CATCAAGTTT GGTCTCTCAT GAGTTCTTGG GGGTCCACTA TTATCCCGAG
  W
  CTTGAGTGAG GGACTCCCTT CGGAGGTCTT TCAGTTTTAC CTCTTATATT TTATCTGTGT
  ACAGATGTGT ACAGATTTTT AAAAGCTAAG AGTATAATTG TCTTTTTTGG TGTGAGAGGT
  TTCAAGACAC TGTTTCTCTG TGTAGCTTTG GCTGTCCTAG AACTAGCTCT GTAGACCAGG
  CTGGTCTCAA ACTCAAAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895583	CHEV_3_116264720	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234399123					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116355451 () rs orientation: forward

Symbol	Name	Function Class
Gm9761	predicted gene 9761	376 bp upstream
Gm65478	predicted gene, 65478	within coordinates
Lrrc39	leucine rich repeat containing 39	1171 bp upstream
Rr583740	regulatory region 583740	686 bp proximal
Rr583741	regulatory region 583741	1187 bp proximal
Rr583742	regulatory region 583742	1602 bp proximal
Tssr31355	transcription start site region 31355	1141 bp upstream
Tssr31356	transcription start site region 31356	1163 bp upstream
Tssr31357	transcription start site region 31357	1206 bp upstream
Tssr31358	transcription start site region 31358	1249 bp upstream
Tssr31359	transcription start site region 31359	1262 bp upstream
Tssr35315	transcription start site region 35315	259 bp upstream