rs234400130 SNP Detail

Summary

• ID
  rs234400130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142418068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACACTAA TAGCATGAAG
  AGGTAACATT TCTGATTAGT CCTGACCACA TATAGCTTTT CCTCTAAGAA AAGAATTTCT
  TAATTTGCTT CTTATTTATA AGGAAAATGC TCAGACAAAA CAATAACTTG CCCCTTGGTC
  TTGCAAACTT TATATGCCCC AGTATAGGGG AACACCAGGG CCAAGAAGTG GGAGTGGGTG
  R
  GTAGGGGAGA GGGGTGGGGG GAGGGTATAG GGGACTTTCG GGATAACATT TGAAATGTAA
  ATGAAGAAAA TACCTAATAC AAAATTAGAA AAAGTTTTAA AAAATTCCTA CTTGGCCATG
  ACATTCATTT ACATTTCTAA CATTAACAAG CCTATTCAGC CACTCACTAC CCTTTTGGAT
  TCTCTCCCTC TTCACCCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322044832	CHEV_6_142420862	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234400130					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142418068 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Rr640649	regulatory region 640649	790 bp distal
Rr640650	regulatory region 640650	445 bp proximal
Rr640651	regulatory region 640651	757 bp proximal
Tssr63950	transcription start site region 63950	456 bp downstream
Tssr63951	transcription start site region 63951	471 bp downstream
Tssr63952	transcription start site region 63952	502 bp downstream
Tssr63953	transcription start site region 63953	555 bp downstream
Tssr63954	transcription start site region 63954	618 bp downstream
Tssr63955	transcription start site region 63955	647 bp downstream
Tssr63956	transcription start site region 63956	733 bp downstream