rs234401065 SNP Detail

Summary

• ID
  rs234401065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCTTTG TTTTTGTTTT
  CATTTTTCCT CTTCCTCCTC CATCACTGTC ACCACCATGC TGCAGATGAG CTTCAGTGCC
  TGGAACGTGC TTCTCCGGTG CTGCACCACG GATCTATACC GCTACCCCAC ACCCTTCTTC
  TTAACAGTAT ATGCGTCACC GTTAGCAAAG TCTATCTCCC CTTCCTACAT CGCCTCCTTA
  Y
  TCACAGTCCA ACAAACGATT TTTTTCCTGA GACAAGATTT TAGTATGTAC ATAGCCTAGG
  CTGGCAGTGA AATTGCCATC CTGGTTCAAC CTCTCAAGAG CTGGGTTTAC CGGGTTTATT
  GGTGTGTGCC ACTCCTGCTA TCAACAGACA CTTTTGAAGG TCTCTTTATA CCTGATCTTG
  TTCTTAGTTC TTTCTGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210078	MGP_WTSI_10_128182629	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234401065					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210078	MGP_WTSI_10_128182629	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1350 bp distal
Dgka	diacylglycerol kinase, alpha	718 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	396 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1758 bp proximal
Rr385481	regulatory region 385481	1752 bp upstream
Rr402364	regulatory region 402364	624 bp downstream
Tssr96440	transcription start site region 96440	751 bp downstream
Tssr96441	transcription start site region 96441	550 bp downstream
Tssr96442	transcription start site region 96442	339 bp downstream
Tssr96443	transcription start site region 96443	884 bp upstream
Tssr99941	transcription start site region 99941	1728 bp upstream
Tssr99942	transcription start site region 99942	1663 bp upstream
Tssr99943	transcription start site region 99943	1601 bp upstream
Tssr99944	transcription start site region 99944	1578 bp upstream
Tssr99945	transcription start site region 99945	1488 bp upstream
Tssr99946	transcription start site region 99946	1464 bp upstream
Tssr99947	transcription start site region 99947	1321 bp upstream
Tssr99948	transcription start site region 99948	1291 bp upstream
Tssr99949	transcription start site region 99949	686 bp upstream
Tssr99950	transcription start site region 99950	515 bp upstream
Tssr99951	transcription start site region 99951	492 bp upstream
Tssr99952	transcription start site region 99952	488 bp upstream
Tssr99953	transcription start site region 99953	451 bp upstream
Tssr99954	transcription start site region 99954	107 bp upstream
Tssr99955	transcription start site region 99955	74 bp upstream
Tssr99956	transcription start site region 99956	660 bp downstream
Tssr99957	transcription start site region 99957	727 bp downstream