rs234402337 SNP Detail

Summary

• ID
  rs234402337
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72539447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGCTCTCTCC CCAAGATGGC TAGGTCCCCT CCCTCACCCC TGGGTCCCTG
  M
  TGTGGTAGGA GGTGATGGTC AGTTGCACCC AGCAAGAGGG AGTGCTGCTT           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771603	MGP_WTSI_X_70741180	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234402337					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771603	MGP_WTSI_X_70741180	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72539447 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	1847 bp distal
Rr7747	regulatory region 7747	710 bp distal
Rr10758	regulatory region 10758	1920 bp distal
Tssr5634	transcription start site region 5634	1120 bp upstream
Tssr5635	transcription start site region 5635	777 bp upstream
Tssr161228	transcription start site region 161228	1232 bp downstream
Tssr161229	transcription start site region 161229	1199 bp downstream
Tssr161230	transcription start site region 161230	1175 bp downstream
Tssr161231	transcription start site region 161231	1150 bp downstream
Tssr161232	transcription start site region 161232	1105 bp downstream
Tssr161233	transcription start site region 161233	1031 bp downstream
Tssr161234	transcription start site region 161234	1007 bp downstream
Tssr161235	transcription start site region 161235	925 bp downstream
Tssr161236	transcription start site region 161236	878 bp downstream
Tssr161237	transcription start site region 161237	853 bp downstream
Tssr161238	transcription start site region 161238	817 bp downstream
Tssr161239	transcription start site region 161239	766 bp downstream
Tssr161240	transcription start site region 161240	732 bp downstream
Tssr161241	transcription start site region 161241	709 bp downstream
Tssr161242	transcription start site region 161242	538 bp downstream
Tssr161243	transcription start site region 161243	509 bp downstream
Tssr161244	transcription start site region 161244	439 bp downstream
Tssr161245	transcription start site region 161245	389 bp downstream
Tssr161246	transcription start site region 161246	246 bp downstream
Tssr161247	transcription start site region 161247	211 bp downstream
Tssr161248	transcription start site region 161248	35 bp upstream
Tssr163547	transcription start site region 163547	1164 bp upstream
Tssr163548	transcription start site region 163548	1092 bp upstream
Tssr163549	transcription start site region 163549	1026 bp upstream
Tssr163550	transcription start site region 163550	963 bp upstream
Tssr163551	transcription start site region 163551	805 bp upstream
Tssr163552	transcription start site region 163552	743 bp upstream
Tssr163553	transcription start site region 163553	670 bp upstream
Tssr163554	transcription start site region 163554	645 bp upstream
Tssr163555	transcription start site region 163555	547 bp upstream