rs234407409 SNP Detail

Summary

• ID
  rs234407409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156480171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGATGAT GAGATGCCTG
  TTATTCAGGG CTGCACCCTA ATTGATACTG TACTTACATG TGCATATGCA GAGATGTATG
  TACATGGGAG TATGTGCTTC CTTGAGTGTG CTTTTTGTTC TGAGGAAAGA AGTTGACAGT
  CAAAAGTTAG GAATAGGCCA AGTGTATGGT ACACACTTCA TATCCCGGCA GTTGGCGGGG
  R
  TGGGGGGTGG GGGGGGGGCA GAGGCATGCA CATTTCAGTG GCTTTGAGCC CAACTTGGTC
  AACTTAGTAA GTTTCAGGGC AGCCAAAGCT GCATAATGAG ATCTTGGCTG AAAAAAAAAA
  ATCTAGGAAG GACTGACTGA GTTAGCAGAA GGAGTCTTCA CTTAGTGTTT TCAACAATGA
  GCACAATGTC ACTAACTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss404975602	MGP_WTSI_X_154135107	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A	G	A	G	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs234407409					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A	G	A	G	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404975602	MGP_WTSI_X_154135107	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156480171 () rs orientation: forward

Symbol	Name	Function Class
Smpx	small muscle protein, X-linked	1798 bp upstream
Tssr162436	transcription start site region 162436	1810 bp upstream
Tssr162437	transcription start site region 162437	1894 bp upstream
Tssr162438	transcription start site region 162438	1938 bp upstream
Tssr162439	transcription start site region 162439	1978 bp upstream