rs234419172 SNP Detail

Summary

• ID
  rs234419172
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96078771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTACCCA AGTCTTTTTC
  TGTCCCACTT TGATCTGAAT GTCCTCTCGC CTCCCTCCAA GGGAGATCTC GCCTTCCTTG
  CGCCCTCCCT CAGCATAGGG TCGAGTCATG GGTCACTCCT GCTCCCCAGA GATAGGAGCT
  AAGCAGGCTA GGAGAGGTTT ACTGCCATCA GGAAAAATGG AGTAGGGTCA CCCACCTGCC
  S
  GGTCACCGCA GGCGGCACCT GCTACTGAGA AGCCTCGGGT TAGGTCCCGC CCCCAGCCTC
  CGCCTGGCTT TGCGCACAGG GAGCACACTG GCCCTTTAAG AACCGCGGCT CCCGCCGCGC
  ACTGGGAGTA GGGCTGCGGA GCCAAACTCG CCGGGGACGC CGGGCGCTGG CTAGCTGGCT
  GGCGGGCTCG TCGCTCTGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322811402	CHEV_8_97876043	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234419172					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96078771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20872	CpG island 20872	within coordinates
Mmp15	matrix metallopeptidase 15	153 bp upstream
Tssr78982	transcription start site region 78982	93 bp upstream
Tssr78983	transcription start site region 78983	115 bp upstream