rs234419456 SNP Detail

Summary

• ID
  rs234419456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44382985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCTCATC TGTAGATGCT
  TGCCCAGCAT GTGGGAATCG TCAGGTCCCA TCCTTAGCTG TGTGCGTGTT TGTGATAGGT
  ATGCTAGTGA CCACACACAA AAGCTCCCAG ACAGTACAAC CAGATCCACT TTTATTAGGA
  ACAAATACAA TCTCAATCAG TACAAGTAGG CTTCAAGAGT TGATATTAAT GGAAATCATC
  Y
  AAATTACACT TGGGTCACAA ATAATTACCC CACATAAAAA GGGAAAAAAA AAATCTCATT
  CAGGGAAGGG AAAGGTTTCC TGCAATGGTT TTCATGGCAG TGGGTAGGTA GTCTTGCACT
  TTGACTGGTC ATATCTGTCA GTCTCTGGGA AGAGCAATGT AGACTAAACG ATGGTCTCAG
  GAACATATAT AGTTCTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552066	MGP_WTSI_19_44469036	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234419456					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552066	MGP_WTSI_19_44469036	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44382985 () rs orientation: forward

Symbol	Name	Function Class
Rr548236	regulatory region 548236	78 bp distal
Rr548237	regulatory region 548237	116 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	within coordinates
Tssr5524	transcription start site region 5524	1813 bp downstream
Tssr156606	transcription start site region 156606	1862 bp upstream
Tssr159446	transcription start site region 159446	36 bp downstream
Tssr159447	transcription start site region 159447	213 bp downstream
Tssr159448	transcription start site region 159448	245 bp downstream
Tssr159449	transcription start site region 159449	297 bp downstream
Tssr159450	transcription start site region 159450	324 bp downstream
Tssr159451	transcription start site region 159451	396 bp downstream
Tssr159452	transcription start site region 159452	686 bp downstream
Tssr159453	transcription start site region 159453	745 bp downstream
Tssr159454	transcription start site region 159454	777 bp downstream
Tssr159455	transcription start site region 159455	1070 bp downstream
Tssr159456	transcription start site region 159456	1192 bp downstream
Tssr159457	transcription start site region 159457	1236 bp downstream
Tssr159458	transcription start site region 159458	1266 bp downstream
Tssr159459	transcription start site region 159459	1356 bp downstream
Tssr159460	transcription start site region 159460	1393 bp downstream
Tssr159461	transcription start site region 159461	1452 bp downstream
Tssr159462	transcription start site region 159462	1480 bp downstream
Tssr159463	transcription start site region 159463	1526 bp downstream
Tssr159464	transcription start site region 159464	1549 bp downstream
Tssr159465	transcription start site region 159465	1573 bp downstream
Tssr159466	transcription start site region 159466	1594 bp downstream
Tssr159467	transcription start site region 159467	1647 bp downstream
Tssr159468	transcription start site region 159468	1895 bp downstream
Tssr159469	transcription start site region 159469	1965 bp downstream
Tssr159470	transcription start site region 159470	1982 bp downstream
Tssr159471	transcription start site region 159471	1999 bp downstream