rs234421643 SNP Detail

Summary

• ID
  rs234421643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:115089429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTCCTGA TTACTTTCCT
  AGGGTTTGTA TCTCCAGAGT TGTCGTCTCC CTTTGGGTTT TCTTCATTGT TTCTCCTTCC
  ATTTTTAGAT CTTGGGTGGT TTTGTTCAAT TCCATCACCT GTTTGGTTGG GTTTTCCTGC
  AATTCTTTAA GGGATTTTTG TGTTTCTTCT ACCTGTTTAT CAGTGTTTGC CTGTAGTTCT
  Y
  TAAGGACTTA TAACTATTTA GCAGTGTTCT CCTGTAATTC CTTGAGGGAT TTTTGTGTTT
  CCTCTTTAAG GGCTTCTACA TCTTTAGCAC TGTTCTCCTG TATTTCTTTA TGTGAGTTAT
  TAATGCCCTT CTTTAAATCT TCTACAACCA TCATGATATA TGATTTTAAA TCCACGTCTT
  GCTTTTCGGG TGTGCTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
ss387453552	MGP_WTSI_12_116364020	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
rs234421643					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387453552	MGP_WTSI_12_116364020	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:115089429 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Rr387812	regulatory region 387812	1908 bp upstream