rs234423726 SNP Detail

Summary

• ID
  rs234423726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143907935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCGCAG CGCTTCCAGG
  AGAGGGAGCC GGCCGTCACC GGGGGCGGCT GCGAGCTGCT GCCCGGATTC ACCATGGTCT
  GGAGAGAGAG AGAGAAAGAC AAAACGGGCG ATGCAAAAGT TAGAAGTCGA TCGCAGGGCG
  CCTGAAGCCA GCGCGCTCCC CTCCTCCCTC CCCCGAGTGG CTAAAGGAGA AGCAGCAGCA
  R
  GGCCAGGGCG GGAAGGAGGC CGATCGGAGA GAAGGGAAGA AGGGAGGCTC GCCGGCAGCA
  GCCGCCTGTT TACTTTTCTC AAGCTTTGTT CTGGGGCCAC GAGCTGCTCT CAACTTTCCA
  AAGCGCTTGC TGCTGACAAT TTCAGCTCGG GGACTGTCAA AACTCCGAGA GCTAGGCTCT
  GTGGCGCGCT CCACCCCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss360062397	MGP_WTSI_3_143865138	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs234423726					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360062397	MGP_WTSI_3_143865138	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143907935 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13894	CpG island 13894			within coordinates
Lmo4	LIM domain only 4			Intron
				mRNA-UTR
Rr375847	regulatory region 375847			1501 bp downstream
Rr406521	regulatory region 406521			840 bp proximal
Rr586598	regulatory region 586598			1561 bp distal
Rr586599	regulatory region 586599			168 bp distal
Rr586600	regulatory region 586600			148 bp proximal
Rr586601	regulatory region 586601			1713 bp proximal
Tssr35962	transcription start site region 35962			1231 bp upstream
Tssr35963	transcription start site region 35963			221 bp upstream
Tssr35964	transcription start site region 35964			205 bp upstream
Tssr35965	transcription start site region 35965			126 bp downstream
Tssr35966	transcription start site region 35966			176 bp downstream
Tssr35967	transcription start site region 35967			405 bp downstream