rs234428730 SNP Detail

Summary

• ID
  rs234428730
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150592042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAAAAAA TCAGTCACCT
  GAAAATACCT GGTCCTTTTG TGTCTCTGCA GATCCTGTGT GGTGAGGGGC GTAGGGAATG
  CTCATAGCCA GAATAGGAAA CTCTCAGACA GTGAGGAAGG AGCTTCCCTA GGGAGAGGCA
  GAGGAATGTG ATTACAGGAT CTCTCCTGGG GTGCTGCAGA GCCATGAAGG GGGCTGAATA
  S
  CTAGCGTTGA GGGGAGGTTT CCCCATCCCT GTTACCAGCG TTTTAACAAT GTCCTTGAAA
  ATAATGCAGC AAGCATAAAG GTAAGTCTGA ATATTGCCCG CCCCCCTTCT CCTGCCCTGG
  AAGAAGTGTA GACTAAGATG GTGTGTATCT GAGTCCCATC TGGAGCCTCA TGGACAGAAC
  GAACCTGAGA GTTACACAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356122335	MGP_WTSI_2_150575858	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	G	G	G	C	G	C	G	C	C	G	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234428730					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	G	G	G	C	G	C	G	C	C	G	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356122335	MGP_WTSI_2_150575858	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150592042 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12411	CpG island 12411			539 bp distal
Entpd6	ectonucleoside triphosphate diphosphohydrolase 6			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm74654	predicted gene, 74654			within coordinates
Rr397383	regulatory region 397383			1023 bp downstream
Rr567087	regulatory region 567087			1070 bp distal
Rr567088	regulatory region 567088			325 bp distal
Rr567089	regulatory region 567089			within coordinates
Rr567090	regulatory region 567090			493 bp proximal
Rr567091	regulatory region 567091			644 bp proximal
Tssr20707	transcription start site region 20707			975 bp downstream