rs234429987 SNP Detail

Summary

• ID
  rs234429987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:6950637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGTTCTA GGAAAGTCAA
  AACCTTGTTC TGTCCTCCAT AGTCTTGGGG TGGTACACGT ACTGCATACA CATATACAAA
  GTGGTCATAA CATAAATTTG TAACACATAA AATAACAAAA AGTAGCATAA AAGAGAAGCC
  TAGTGGTGCA GGCCTTTAAT CCCAGCACTT GGGAGGCAGA GGCAGGCAGA TTTTTGAGTT
  Y
  GAGGCCAGCC TGGTCTACAG AGTGAGTTCC AGGACAGCCA GAACGATACA GAGAAACCCT
  GTCTCGAAAA AAAAAAAAAA AAAAAAAAAA AGCCTAAAGT CCCGGGTTTG AGTTTGGAGG
  TAGCAGCATC TGTGGGACCC TAAGCCAAAC TCTGAAATCT GCCTGCTCAG AAGATGTCCA
  TACAGGGCTA GGACTTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683879	MGP_WTSI_19_7047759	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234429987					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683879	MGP_WTSI_19_7047759	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6950637 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10537	CpG island 10537			953 bp proximal
Plcb3	phospholipase C, beta 3			Intron
				Noncoding-Transcript-Variant
Ppp1r14b	protein phosphatase 1, regulatory inhibitor subunit 14B			1779 bp upstream
Rr543521	regulatory region 543521			1299 bp distal
Rr543522	regulatory region 543522			1209 bp proximal
Rr543523	regulatory region 543523			1919 bp proximal
Tssr154704	transcription start site region 154704			1344 bp upstream
Tssr154705	transcription start site region 154705			1682 bp upstream
Tssr154706	transcription start site region 154706			1779 bp upstream
Tssr154707	transcription start site region 154707			1807 bp upstream
Tssr154708	transcription start site region 154708			1842 bp upstream
Tssr154709	transcription start site region 154709			1853 bp upstream
Tssr154710	transcription start site region 154710			1869 bp upstream
Tssr154711	transcription start site region 154711			1943 bp upstream