rs234436368 SNP Detail

Summary

• ID
  rs234436368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36073586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctgtaatgg gatccgatgc cctcttctga
  tgtgtgtctg aagacagcga cagtgtattc atataaataa aaaataaaaa taaaaaaata
  aagaTGGGGA AGCAGTAATG AAGGACACTG GTCTAGGTTT GAGCCTGAGC AATCTAGtct
  Y
  cttcttcttc ttcttcttct tcttcttctt cttcttcttc ttcttcttct tcttcttctt
  cttcttcttc ttcttcttct tctaattctt cttcttcttc ttcttcttct tcttcttctt
  cttcttcttc ttcttcttct tcctcctcct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584114	CHEV_18_36100187	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234436368					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36073586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9857	CpG island 9857	1698 bp distal
Cpgi9858	CpG island 9858	557 bp distal
Gm56493	predicted gene, 56493	within coordinates
Rr536027	regulatory region 536027	1168 bp distal
Rr536028	regulatory region 536028	876 bp distal
Rr536029	regulatory region 536029	655 bp distal
Rr536030	regulatory region 536030	116 bp distal
Rr536031	regulatory region 536031	1375 bp proximal
Rr536032	regulatory region 536032	1404 bp proximal
Rr536033	regulatory region 536033	1876 bp proximal
Tssr150585	transcription start site region 150585	1836 bp upstream