rs234438872 SNP Detail

Summary

• ID
  rs234438872
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33879364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGGCGC CGTGCGATCC
  ACTCCGGCGG GGGGACTCAG TGGTGGGCGG CCGGCCACTG GGACAGAGGA GACCCTGGAA
  AAGCGGGCCG AGAGACGGAG CCGCGCGTGG TGAGTTGGGC TCTAGCGGCC GCCAGGTTAG
  TGTGAAGGAC TCGGCTGGCA CTCGGAGGTT CCGGGCGGGC TCAGAAGCAG TCAGGGGGTG
  M
  GATATGCGGG AAGTGGAGCG GTTCGTAAGT GCGGCGAGGC CGGGGCAAGG CGCGGGCTTC
  CCGCTCTGGA AAGTTTGCGG CTACTGCCTC CGTCCTGGGA GGGCTCTGCG GCAACCAGGG
  AGGGAAGGAG GAGGGAGGAA CCGCGGCTGG GAGGAGGCGG CCGGCGCCAG GCAGCCCGGG
  AGAGAGCTAG GAGTCGGCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss364486337	MGP_WTSI_5_34064669	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs234438872					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364486337	MGP_WTSI_5_34064669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33879364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15741	CpG island 15741	within coordinates
Fgfr3	fibroblast growth factor receptor 3	within coordinates
G630022F23Rik	RIKEN cDNA G630022F23 gene	within coordinates
Rr366768	regulatory region 366768	within coordinates
Rr407322	regulatory region 407322	within coordinates
Rr609611	regulatory region 609611	212 bp distal
Rr609612	regulatory region 609612	within coordinates
Rr609613	regulatory region 609613	297 bp proximal
Tssr45829	transcription start site region 45829	1188 bp downstream
Tssr45830	transcription start site region 45830	220 bp downstream