rs234439773 SNP Detail

Summary

• ID
  rs234439773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53214909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTGGAT TAAAATTCCT
  CTACACAGCC GGGCAGTGGT GGCGCATGCC TTTAATCCCA GCACTTGGGA GGCAGAGGCA
  GGCAGATTTA CAAGTTCGAG GCCAGCCTGG TCTACAGAGT GAGTTCCGGG ACAGCCAGGG
  CAACACAGAG AAACCCTGTC TCAAAAAAAG ACCAAAAAAT CCTCTACGCA GATCTTTGAA
  R
  GAAAAATCAA AAACAAAAAA AAAAAAACCA AAACAAAACA AAAAACCAAC CAAACAACAA
  CAAAATCAGA ATGATCCAGT CATCATGACG ACACCTGTAA TTTCTTGGGG TTTTTGGTGT
  TTTGTTTTTT GAGACAGTTT GTGTGTGCAG CCTTGGTTTT CCTGAAACTC CCTGTGTAGA
  TGAGGCTGGC CGTGAATCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323672282	CHEV_11_53137584	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234439773					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53214909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	509 bp proximal
Gm74485	predicted gene, 74485	within coordinates
Rr447001	regulatory region 447001	283 bp proximal
Rr447002	regulatory region 447002	553 bp proximal
Rr447003	regulatory region 447003	608 bp proximal
Tssr101382	transcription start site region 101382	592 bp upstream
Tssr107917	transcription start site region 107917	508 bp downstream
Zcchc10	zinc finger, CCHC domain containing 10	607 bp upstream