rs234445520 SNP Detail

Summary

• ID
  rs234445520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112641767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACTCCC GGAGAAGAAC
  TCACTCTCCT CTCAGCCACG CCCCATACCC TTCAGACGGG GATGGGGATG GGGGGCTCTG
  TTCTGTGCCC TATCTGCTGC ACAGCTGCCC CAGCTCAGAG AGCCTCCAGG GCGCTAAGTC
  AGAGGCTCAG CAGCAGTTCT GTTCTGCTCC AGCAGTATCC CTGACCCTGA GAGTGGCCTT
  Y
  AGAGGCTGAG AGTCACACAA ATATCCATCA CTCGCCCAGC AAACCTTCAC CCCAGGCCCC
  CAACTCCTCC TCTCCTACTT CCCCCATCCC GTTGCTACAC AGTTAGAGCC AGCAGGGCGC
  CCTCTTGTGG AACACAGCAA TTTCTGGCTG TTCTCTAGTG ACCCTTCTCA CTCGGATGCT
  CTTCCTGGAA GCCACTGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170091	CHEV_12_113913544	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234445520					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112641767 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	501 bp upstream
Cpgi5173	CpG island 5173	424 bp distal
Gm30150	predicted gene, 30150	within coordinates
Rr369631	regulatory region 369631	97 bp upstream
Rr473553	regulatory region 473553	1068 bp distal
Rr473554	regulatory region 473554	912 bp distal
Rr473555	regulatory region 473555	933 bp distal
Rr473556	regulatory region 473556	within coordinates
Rr473557	regulatory region 473557	330 bp distal
Rr473558	regulatory region 473558	114 bp proximal
Rr473559	regulatory region 473559	305 bp proximal
Rr473560	regulatory region 473560	551 bp proximal
Tssr115391	transcription start site region 115391	910 bp downstream
Tssr117877	transcription start site region 117877	1306 bp upstream
Tssr117878	transcription start site region 117878	1247 bp upstream
Tssr117879	transcription start site region 117879	1058 bp upstream
Tssr117880	transcription start site region 117880	966 bp upstream
Tssr117881	transcription start site region 117881	948 bp upstream
Tssr117882	transcription start site region 117882	569 bp upstream
Tssr117883	transcription start site region 117883	519 bp upstream
Tssr117884	transcription start site region 117884	496 bp upstream