rs234449565 SNP Detail

Summary

• ID
  rs234449565
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100825716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCTGTA AGGCATTTTC
  TCAATTAGTG ATCAAGGGTG GGAGGTCCCA TTGTGGGTGG TGCCATCCCT GGGCTGGTAG
  TCTTGGGTTC TATAAGCAAG CAAGCTGAGC AAGCCAGGGG AAGCAAGCCA GTAAGTAACA
  TCCTTCCATG TCCTCTGCAT CAGCTCCTGC TTCCTGACCT GCTTGAGTTC CAGTCCTGAC
  W
  TCCTTTGGTG ATGAACAACA ATGTGAAAGT GTAAGCTGAA GAAACCCTTT CCTCCCCAAC
  ATGCTGCTTG GTCATGATGT TTGTACAGGA ATAGAAACCC TGATGAAGAC AATAGTCAAA
  GGTAATTTTG GTTCTGGATC TGTAACATTC TGACTCTACA CAATCATGAA GTTCTAATTA
  ATAAGTTGGA TAGAATCTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366025538	MGP_WTSI_5_101106869	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	A	T	A	A	T	T	A	A	T	T	T	T	A	T	T	A	A	A	T	A	A	A	A	T	A	T	A	T	A	A	T	T	A	A	A	A	T	A	T	A	T	A	A	A	A	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234449565					SNP	T	T	T	A	A	T	A	A	T	T	A	A	T	T	T	T	A	T	T	A	A	A	T	A	A	A	A	T	A	T	A	T	A	A	T	T	A	A	A	A	T	A	T	A	T	A	A	A	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366025538	MGP_WTSI_5_101106869	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100825716 () rs orientation: forward

Symbol	Name	Function Class
Gm15777	predicted gene 15777	within coordinates
Hpse	heparanase	1634 bp downstream
Rr378347	regulatory region 378347	1666 bp upstream
Rr615545	regulatory region 615545	1986 bp proximal