rs234463040 SNP Detail

Summary

• ID
  rs234463040
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95738540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGGGTA GCTTTGACTA
  GCTCTTGCTA TTGTTTCAGA CTGTGCCTCA CCATGTAACC TAAGGCGGCT TAAGCTGGTT
  ACCATGCTGC CTCCGCCTCT AAAGTGCTAG AATTATAGCC ATGTAGTGCT GTGGCCAGCT
  TATTGTCACT CTGTGGAGAG CTATCAGTAC CTCCCTACCA CTTACCGACA CTGGGTGATG
  A
  TGCTGTCCCT CAGTTGTGTT GGATCATATT CACAGATAGC CTAGGACATA TGTGGACTGC
  CCATGGTGGC CCACCAACGG CACTGGGAGG AGAGGGGGTG GTATTGGAAT GTAAAGTGAA
  AAACAAATAA TTGTTTCAAA AATTGCTTTT TGGATTAGAT TTGCCAGAGC TCTGCTGTTT
  GGGGTCCTGC ACTTCAGAAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104509	CHEV_9_95756906	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234463040					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95738540 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	within coordinates
Atr	ataxia telangiectasia and Rad3 related	1110 bp upstream
Cpgi22158	CpG island 22158	893 bp proximal
Rr206894	regulatory region 206894	460 bp proximal
Rr368834	regulatory region 368834	923 bp upstream
Tssr86577	transcription start site region 86577	1141 bp upstream
Tssr86578	transcription start site region 86578	1207 bp upstream
Tssr86579	transcription start site region 86579	1457 bp upstream
Tssr90940	transcription start site region 90940	1072 bp downstream
Tssr90941	transcription start site region 90941	1377 bp downstream
Tssr90942	transcription start site region 90942	1394 bp downstream