rs234470597 SNP Detail

Summary

• ID
  rs234470597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83464946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACAATGG TCAGCTTATC
  AAAAAAAATT TATAGATTCA TTGCAATTCC CATCAAAATT CCAATGCAAT TCTTCACAGA
  TTTTGAAAAT AACAATCTTA AAATTCATAT GGAAACACAA AAGATCTTAG GTAACCCAAA
  CACCCCTGAA CAATAGAGAC ACTGCTGAAG GGATTATCAT ACAGAGCCAC AGTAAAAAAA
  Y
  AGCATGAGAC TGGTATAAAA ACAAGCTGAC CAAGTTGAGA TCCTCGAATA GAATTGAGGA
  TCTTATCGAA CAGGGAGAAC TTCCAAAGAT TTGTAGATCA CTTTAATGAT TCTCTCTATA
  GTGGGTAAAA TACATCCTTG ATATGAAGTC TACATTGGAA TAAACTATAT TTCTGGAAAT
  TTAAAAATTG TACCATGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072495	MGP_WTSI_11_83387622	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234470597					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072495	MGP_WTSI_11_83387622	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83464946 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Tssr103714	transcription start site region 103714	527 bp upstream
Tssr103715	transcription start site region 103715	568 bp upstream
Tssr103716	transcription start site region 103716	1230 bp upstream
Tssr109677	transcription start site region 109677	436 bp upstream
Tssr109678	transcription start site region 109678	55 bp upstream
Tssr109679	transcription start site region 109679	207 bp downstream
Tssr109680	transcription start site region 109680	469 bp downstream
Tssr109681	transcription start site region 109681	591 bp downstream
Tssr109682	transcription start site region 109682	860 bp downstream
Tssr109683	transcription start site region 109683	911 bp downstream
Tssr109684	transcription start site region 109684	937 bp downstream
Tssr109685	transcription start site region 109685	982 bp downstream
Tssr109686	transcription start site region 109686	1045 bp downstream
Tssr109687	transcription start site region 109687	1094 bp downstream
Tssr109688	transcription start site region 109688	1141 bp downstream
Tssr109689	transcription start site region 109689	1184 bp downstream
Tssr109690	transcription start site region 109690	1197 bp downstream
Tssr109691	transcription start site region 109691	1207 bp downstream
Tssr109692	transcription start site region 109692	1238 bp downstream
Tssr109693	transcription start site region 109693	1349 bp downstream
Tssr109694	transcription start site region 109694	1743 bp downstream
Tssr109695	transcription start site region 109695	1793 bp downstream