rs234482692 SNP Detail

Summary

• ID
  rs234482692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149558717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCGAATC ACAGAGCACC
  ATGGCTTTGT GAGAGAGGGA GCCCATGCTT AGAAAGTAAG TTCCTAGCAA GGCTTTCTTC
  CTCCTATTCA CTCATAAATG TTCCTCTAAT AAGGTCGGAA TGATTTTACC TTTGGGTTCG
  ATGTTTAACA TTTATTATCT TGGACTTTGC ACATGGGGGG AAAAAGCCCT ATAATGATTG
  Y
  CTTAAAAAGC ATACAGCTGT TGTCGGTGAA GGCACACGCA GGTCTAACTG CCTCTAATAT
  GTAACCTTCA GAAACTAACC CCCTCAAAAA GTTGCTTTTT ACCATGCTTC CGTTTACCCA
  CCCACGTTGC TGCAGAATAT TTAATTCCGA AGCAAAAAAA TCCATCTTCC CCACTGAATT
  TTTTGCACAG CAGTGTGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321721103	CHEV_5_150437827	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234482692					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149558717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17098	CpG island 17098	274 bp proximal
Hsph1	heat shock 105kDa/110kDa protein 1	within coordinates
Rr399535	regulatory region 399535	959 bp upstream
Tssr49917	transcription start site region 49917	1158 bp upstream
Tssr49918	transcription start site region 49918	1248 bp upstream
Tssr49919	transcription start site region 49919	1275 bp upstream
Tssr49920	transcription start site region 49920	1565 bp upstream
Tssr54646	transcription start site region 54646	912 bp downstream
Tssr54647	transcription start site region 54647	946 bp downstream
Tssr54648	transcription start site region 54648	981 bp downstream
Tssr54649	transcription start site region 54649	1020 bp downstream
Tssr54650	transcription start site region 54650	1079 bp downstream
Tssr54651	transcription start site region 54651	1411 bp downstream