rs234483007 SNP Detail

Summary

• ID
  rs234483007
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129853861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATA GACCAAGCAC TCTGCGGCCC
  S
  GGCGTCCTGT GAGCTCTCGG GGCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320964116	CHEV_3_129763130	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234483007					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129853861 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13821	CpG island 13821			within coordinates
Rr585124	regulatory region 585124			within coordinates
Rr585125	regulatory region 585125			659 bp proximal
Rr585126	regulatory region 585126			685 bp proximal
Sec24b	SEC24 homolog B, COPII coat complex component			Intron
				Noncoding-Transcript-Variant
Tssr31665	transcription start site region 31665			555 bp upstream
Tssr35653	transcription start site region 35653			461 bp downstream
Tssr35654	transcription start site region 35654			523 bp downstream
Tssr35655	transcription start site region 35655			598 bp downstream
Tssr35656	transcription start site region 35656			626 bp downstream
Tssr35657	transcription start site region 35657			638 bp downstream
Tssr35658	transcription start site region 35658			807 bp downstream
Tssr35659	transcription start site region 35659			1273 bp downstream
Tssr35660	transcription start site region 35660			1355 bp downstream