rs234513305 SNP Detail

Summary

• ID
  rs234513305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86235778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCAGCAGG AGAGCTAGAA GGGCCAGACA
  GGCTCAGGCT GTGAAGCTGC ATCTAAGGAC CAGGGAGAGA CATGATTTAA TCAAAGGTCA
  AGGGAGAGAG ATGGATGCTT GGTTGTGCAG CTAGGTGGCA GGCAGGCCTG CATCTCAAGC
  Y
  TCGGAGGTTT AGGGAAGTGT CTGGAGCTGA CCCTAAGAAT GGGGCAACAG GTCAGTAGTT
  CTGAAGCGCC TACTTTGGCT TCCTTTGTCT TTGTCTTGGG TCCTGTGGAC TGGGAACTCA
  GTGAAATTCG CCCCTGTACT GTCGGCCTTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319828020	CHEV_1_88204631	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234513305					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86235778 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	751 bp downstream
Rr366828	regulatory region 366828	within coordinates
Rr414520	regulatory region 414520	16 bp distal
Tssr7739	transcription start site region 7739	1254 bp downstream
Tssr7740	transcription start site region 7740	499 bp upstream
Tssr12766	transcription start site region 12766	338 bp downstream