rs234519422 SNP Detail

Summary

• ID
  rs234519422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9675716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCCCTC TCTACCAGGT
  TCCTTTGAGC ACCAGGTTGT AGGCCTTGCC TCATGTTCTC AGCTCTGTGC AGGTTTGGCC
  CTCCTATGTG TTTCTTCCAG TTTCCACCTG AGGTCCTTAC CTGGTGATAT GATATGGGCC
  GAATTCCAAA AGTGTTCTTT CTGCTCTTGG TTTGGTCTAC TGGCACTGTC CCAGTCTAGA
  R
  AAAGCAACAC ACCAAGTGGT CAAGATTGTT ATTTCAGCTT TTTATATATG TAAGCTAGCA
  GAAGGCCAGT TTGCCATGTT ATGAATGACT GCTGCTTTCG GAGGGAGTAA ACCAGACATT
  CTGCATCCAG ATCATGCCCC TAAATTCTAT AGGTTTTGGC TAGGGCTAGG AGGGCCTTAT
  TCATCAACAA TTGAGTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320651685	CHEV_3_9610656	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234519422					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9675716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	140 bp distal
Gm56803	predicted gene, 56803	1673 bp downstream
Rr69501	regulatory region 69501	within coordinates
Rr73453	regulatory region 73453	885 bp proximal
Rr78141	regulatory region 78141	115 bp distal
Tssr28346	transcription start site region 28346	1832 bp downstream
Tssr28347	transcription start site region 28347	1815 bp downstream
Tssr32578	transcription start site region 32578	616 bp upstream
Tssr32579	transcription start site region 32579	570 bp upstream
Tssr32580	transcription start site region 32580	532 bp upstream
Tssr32581	transcription start site region 32581	409 bp upstream
Zfp704	zinc finger protein 704	571 bp upstream