rs234520870 SNP Detail

Summary

• ID
  rs234520870
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCTGGGA GTTAAACTCG
  GGTCCTCTGG AAGAGCAGCA AGTGCTCTTA GCCACTGAGC CATTTCTGTA GGTCCTGGTA
  TGTCTCTCTC TCCTCCTTCC TGGGCTCCAT CCATACTAGC CTTCTCCTTG CTAAGGACTA
  AGCCAAACTC TATCTTGGGA CCTTTTATTT TTATTTTTTA TTATTTTTAT ATTTTTATAT
  W
  TATATTTTTT TTTGCCCAGA AACCATTCAG CTTTGGGTAT AAATACTTCT TCCCTTTTTT
  CTTCTTTTTT TCCTTTTTAA AAATATTTGT TTGTTTAATG TATGTAAGTA TACTGTTGCT
  ATCTTCAGAC ACACCAGAAG AGGGCATCCA ATCCCATTAC AGATGGTTGT GAGCCACCAT
  GTGGTTGCTG GGAATTGAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743403	MGP_WTSI_7_19759800	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	A	A	A	A	T	A	T	A	T	T	T	T	A	T	T	A	A	T	A	T	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234520870					SNP	A	T	A	A	A	A	T	A	T	A	T	T	T	T	A	T	T	A	A	T	A	T	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743403	MGP_WTSI_7_19759800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908376 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1257 bp distal
Cpgi18450	CpG island 18450	1843 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1970 bp upstream
Gm71808	predicted gene, 71808	1648 bp downstream
Rr155270	regulatory region 155270	976 bp distal
Rr155271	regulatory region 155271	25 bp proximal
Rr167137	regulatory region 167137	1175 bp distal
Rr167138	regulatory region 167138	1024 bp proximal
Tssr64790	transcription start site region 64790	1965 bp upstream
Tssr64791	transcription start site region 64791	1995 bp upstream