rs234536695 SNP Detail

Summary

• ID
  rs234536695
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106765061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTCCCCG GGGTCCAGGT
  ACAGAAACTA GAATGCGTTT GCAACCTACA GACAGGCATC TTGGTGCCAC TGGGTCCAAA
  TTTCTGCTGT AGGTGTCTGG GCGGACAGGA GGCTGGGAAG GTGGGGCTGC TGAGCCAAGG
  GTAAAGAGCA GGTAATGCCA TTATCACTTC TTGCCAAGTT GACAGACTGC TGGCCAGTGT
  Y
  CTGACCACAT CCAGGAGATG AGGTGAAGTA CCGGCAAGAG TACTCAAAGG CCCCTAGGGC
  TTATGCTCTC CACAGACGGT TGCTGGATCA TTGATGCATC TGTAGGATGT CGAAGAACGC
  ACCCAGCTCT TCCCTCCTCC CATAAGCAGA AAGCAACCAG CAGGAGGAGA AAGTGCAGGA
  GGAACTTGGA AGAAACAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378838613	MGP_WTSI_9_106790193	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234536695					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378838613	MGP_WTSI_9_106790193	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106765061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22277	CpG island 22277	185 bp distal
Manf	mesencephalic astrocyte-derived neurotrophic factor	891 bp downstream
Rbm15b	RNA binding motif protein 15B	787 bp upstream
Rr401656	regulatory region 401656	384 bp downstream
Rr686406	regulatory region 686406	571 bp distal
Rr686407	regulatory region 686407	within coordinates
Rr686408	regulatory region 686408	153 bp proximal
Tssr86941	transcription start site region 86941	1425 bp downstream
Tssr91351	transcription start site region 91351	768 bp upstream
Tssr91352	transcription start site region 91352	750 bp upstream