rs234540496 SNP Detail

Summary

• ID
  rs234540496
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43878827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAACAGAA GTATGGATGA
  AGGGGTACTC ATAGGAGCAA CTGCGTCACT CCCACACAGC ACCACAGCTC CGTGGGTGCG
  AGCGATGACT CATTAAAGCC GCAATCCTGG AGCTCTCTGC ACTTTTGTAT ACATCCTGGC
  AATCCAAATC TCTCCTTTGT TCTTCAGTCC TTAGAATCTC CAACCCCCCA CCCCGCCCCC
  W
  CCCCCGCCCC GCCCCCCGTT GTTTACACTT TTTATACCGC TGAGAAAGAG CCCTCAAGAA
  TCTTCCAAAT TTCTGCTCCT ATAGAGAACC TTTCACATCT CCACCTCCAC CCCCACGCCC
  TTGGAGAGGA TGTTTGTATT TGCATGGAAA TGTTTTTACA GCAATCATTA ATAGCCTAGT
  CAGACTGAGC TATGAGACGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
ss398252305	MGP_WTSI_17_43704885	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
rs234540496					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398252305	MGP_WTSI_17_43704885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43878827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	387 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	182 bp upstream
Rr527121	regulatory region 527121	within coordinates
Rr527122	regulatory region 527122	344 bp proximal
Tssr144685	transcription start site region 144685	51 bp upstream
Tssr144686	transcription start site region 144686	160 bp upstream
Tssr144687	transcription start site region 144687	216 bp upstream
Tssr144688	transcription start site region 144688	354 bp upstream
Tssr144689	transcription start site region 144689	511 bp upstream
Tssr144690	transcription start site region 144690	546 bp upstream
Tssr144691	transcription start site region 144691	566 bp upstream
Tssr144692	transcription start site region 144692	622 bp upstream
Tssr144693	transcription start site region 144693	670 bp upstream
Tssr144694	transcription start site region 144694	705 bp upstream
Tssr144695	transcription start site region 144695	753 bp upstream
Tssr144696	transcription start site region 144696	770 bp upstream
Tssr144697	transcription start site region 144697	1460 bp upstream
Tssr148130	transcription start site region 148130	568 bp downstream