rs234542185 SNP Detail

Summary

• ID
  rs234542185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156715556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTGAATAA ACAAATCTTT AACTGAAAGT GTGTTGGCAT
  GCCTGGTAAA CTAAAGCCTT GCTTACCTAC TGACCTTACC CTCTGAACCT AGGAGTAGGG
  Y
  TTAGCAGAGC CCCTGCTCTC TTCCCTCCTC CCTCTCCTCC CACAGCAGCA GTAGCAGCCA
  GACTCTTTCT CTTTTGGCTG GAGTTGGTAT TGGCATTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320582508	CHEV_2_156699372	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234542185					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156715556 () rs orientation: forward

Symbol	Name	Function Class
Rab5if	RAB5 interacting factor	73 bp downstream
Rr568378	regulatory region 568378	within coordinates
Rr568379	regulatory region 568379	187 bp proximal
Sla2	Src-like-adaptor 2	mRNA-UTR
Tssr21217	transcription start site region 21217	1122 bp downstream