rs234546043 SNP Detail

Summary

• ID
  rs234546043
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101029315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGATATC AGGATAAGAC
  TGGGCCGGTT AACATTTTAT CATGGAGGGG AGGAAGGGAT TAGGAGGCTT CCATCCCTCC
  TGATGAGGTT AATACAGTTA ATAGCTGCTG GGGGAGGAAG AGACATTGTC TTTAGTGGTA
  TAGCTGCTAG GATGGATCTT GTGTTCCTAT GAGCAATCCT AATTAAAATC ATTTGGTCAT
  C
  AAAAAAAAAA AAAAAAAAAA AAAGACATGA CAACGGAAGA AGGACTTTCT GAGAAGAGAC
  TGGCAGGAGT TAGAGTGGGC AAGGATCATG GGGGTTGAAT AAGGATCATA TTACATATAT
  ATATATATAT ATATATATAT ATACACACAC ACATACATAC ATATACCCAC ACATGAATGA
  AAATATAATA AACCCATTAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362608921	MGP_WTSI_4_100844723	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234546043					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362608921	MGP_WTSI_4_100844723	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101029315 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	within coordinates
Rr596081	regulatory region 596081	643 bp proximal
Tssr42542	transcription start site region 42542	within coordinates