rs234546922 SNP Detail

Summary

• ID
  rs234546922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76372855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAACTCCA AAAATATATT
  CAAATTACAA TTCATAACAG TAGCAAATAG TTATGAAGCA GCAATGCAAA TAATTTTATG
  GCTGGGGGTT AACACAACTT GAGGAGCTGT TAAAGGGTCC CAGCATTAGG AAGGTTGAGA
  AACCATTGCT CTAGAAACCA AGCCTTGGAG GGCTGTGTAA ACGGAGGAGT TATGAGCTCA
  R
  AGTCTGACAC TTTGGAGAGA TGGTTTAACT CAAGAAACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ATATATATAT ATATATTTGG AATCTACCCA GCCTTGCTTC
  CCCCTCCCCA CACCAACTCC TCGTGTGGAC ACCCAAATCC ACATATGAAC CACACAATGC
  TTTTTAAAAA ATGTTTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325699768	CHEV_18_76399438	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234546922					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76372855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	1053 bp proximal
Rr540992	regulatory region 540992	1306 bp proximal
Rr540993	regulatory region 540993	1928 bp proximal
Smad2	SMAD family member 2	1796 bp upstream
Tssr151989	transcription start site region 151989	1519 bp upstream
Tssr151990	transcription start site region 151990	1548 bp upstream
Tssr151991	transcription start site region 151991	1636 bp upstream
Tssr151992	transcription start site region 151992	1876 bp upstream