rs234551416 SNP Detail

Summary

• ID
  rs234551416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGATTCTG TTTAAGGATG
  GTTTTCCTGA GCCAGTGAAA TGGCTCAGTG CGCAAAGGGG CTTGCTGCCA AATCTGATAA
  CCTAAGTTCA GTTCCCGGAA CCCACATGGA CTATCTGTGC CACGGCATGT ATGAGACCGC
  GCGCGCGCGC GCACACACAC ACACACACAC ACACGTAAAA ACCATCAAAA AGTAGTCATT
  Y
  CCCTTACTTC TAAATGGACA GGATGTATAT ACACACACCA AGTATATATT ACCAAATCCT
  AAGATGTACC AACTGCAGAC TTGACTTTTA ACACAAGAAG GCCATGCAAC CGAATAGATG
  GCACCAACAC CAGACAGATC AGACTCCTTT AAGACTGTTG TGAGGTCAGA TAGCAAGTCC
  ATTTCCAGTA AGCTAGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513539	CHEV_10_121022410	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234551416					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	893 bp proximal
Rr402304	regulatory region 402304	518 bp upstream
Rr402305	regulatory region 402305	1372 bp upstream
Rr440247	regulatory region 440247	within coordinates
Rr440248	regulatory region 440248	1423 bp proximal
Tbk1	TANK-binding kinase 1	Intron
Tssr96043	transcription start site region 96043	863 bp upstream
Tssr96044	transcription start site region 96044	899 bp upstream
Tssr99623	transcription start site region 99623	519 bp downstream
Tssr99624	transcription start site region 99624	547 bp downstream
Tssr99625	transcription start site region 99625	568 bp downstream
Tssr99626	transcription start site region 99626	1356 bp downstream
Tssr99627	transcription start site region 99627	1376 bp downstream
Tssr99628	transcription start site region 99628	1459 bp downstream
Tssr99629	transcription start site region 99629	1487 bp downstream
Tssr99630	transcription start site region 99630	1515 bp downstream