rs234559001 SNP Detail

Summary

• ID
  rs234559001
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108888623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCACCCC AAAGGCCTTC
  CTAGATCCAT ATCTGTGATC CTGCTGGCTG GTAAAATGGA CTACTGCCCC AACACTGACA
  ACTCAAACTG GGTTGTCTCT AGGATTCAAA TGTGCCCGTG AGCCTCTGCC TTTTCTTGTC
  TTTCCCCCAG TCCTTGATCC AGGCCTTCCT AAAAAGGGCT GCCTCCTTGG CCACAAACGT
  W
  CCCCTGCCCC CACCACGGCC CCCGCCCAAA GCTATGACTC AGGGTAATTC CCGAAGAGGG
  GCAGGGTTTT TCCTCAGGGC AGATCAGTTA CCATGGGGGC CATCTCAACT CCAGCAGGAG
  TCATCTCATC AATTCTTGGT CTGCCCTGTC CCTCCCTCTC AGCCACACAA ATCGGACTCA
  GGAAACAAAG CTTGTGTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378877949	MGP_WTSI_9_108962069	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234559001					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378877949	MGP_WTSI_9_108962069	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108888623 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	192 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	64 bp upstream
Rr686956	regulatory region 686956	1690 bp distal
Rr686957	regulatory region 686957	within coordinates
Rr686958	regulatory region 686958	107 bp proximal
Rr686959	regulatory region 686959	253 bp proximal
Shisa5	shisa family member 5	1778 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr91571	transcription start site region 91571	1832 bp upstream
Tssr91572	transcription start site region 91572	1284 bp upstream
Tssr91573	transcription start site region 91573	1150 bp upstream
Tssr91574	transcription start site region 91574	917 bp upstream
Tssr91575	transcription start site region 91575	870 bp upstream
Tssr91576	transcription start site region 91576	784 bp upstream
Tssr91577	transcription start site region 91577	296 bp upstream
Tssr91578	transcription start site region 91578	121 bp downstream
Tssr91579	transcription start site region 91579	156 bp downstream