rs234559112 SNP Detail

Summary

• ID
  rs234559112
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138232829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCAGTTC TCAACCTTCT
  AGGAAAGATG GGAGGACTGG GCGACAGAAG GCACAGCAGG AATGCCCCGC AGTGAGTGCA
  ACCGGAGCTC TGCCCGCTGC CCAGCAGAGG CCTAAATCCA ACTCGGCAGG AAGCGCCCGC
  GGCGCCGGGA GCCACGCACC CTCGCCAGCG ACCACGTGAT CACTTTTTTT TTTTTTGGAA
  G
  AAAAAAAAAA ACTTCTTGCC TTAAGAAAAA AAAAAAAAAA AAAAAAAAAA AAGACTCCAC
  TTCCCAGAAG CCTCTCCTTC CCCAAGCAGC TGCAGTCTTG CGCAGGCGCC GCTAGGGCCA
  AACGGACACG TCCGTCACGT GGGCAGGAGC CGGCCAATCC GGTTTGAATC TCATTTTTTT
  CCTCTCGCCC CCCCTTCAGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359912468	MGP_WTSI_3_138190032	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs234559112					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359912468	MGP_WTSI_3_138190032	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138232829 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13876	CpG island 13876			within coordinates
Eif4e	eukaryotic translation initiation factor 4E			Intron
				mRNA-UTR
Gm64814	predicted gene, 64814			820 bp upstream
Mir1956	microRNA 1956			583 bp downstream
Rr398072	regulatory region 398072			within coordinates
Rr586156	regulatory region 586156			879 bp distal
Rr586157	regulatory region 586157			330 bp distal
Rr586158	regulatory region 586158			within coordinates
Rr586159	regulatory region 586159			143 bp distal
Rr586160	regulatory region 586160			239 bp proximal
Rr586161	regulatory region 586161			576 bp proximal
Tssr31989	transcription start site region 31989			890 bp downstream
Tssr31990	transcription start site region 31990			632 bp downstream
Tssr31991	transcription start site region 31991			610 bp downstream
Tssr31992	transcription start site region 31992			547 bp downstream
Tssr31993	transcription start site region 31993			517 bp downstream
Tssr31994	transcription start site region 31994			486 bp downstream
Tssr31995	transcription start site region 31995			437 bp downstream
Tssr31996	transcription start site region 31996			176 bp upstream
Tssr31997	transcription start site region 31997			1526 bp upstream
Tssr35898	transcription start site region 35898			814 bp upstream
Tssr35899	transcription start site region 35899			105 bp upstream
Tssr35900	transcription start site region 35900			66 bp upstream