rs234580545 SNP Detail

Summary

• ID
  rs234580545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77872210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAAAGTC TGACCTGTGA
  ATCAAGAAAT GTTTCCTTTT TAGGTTTGCT ATAAACTCAA TATGCGTCTA AGCAAACCAC
  TCTCCACTCT GTACCTGGAA ATGAAGAATT TAAATCAAAT AGTCTCTAAG TCCCTCCCAG
  GTTTACGGGT CTGAGAATAA TGTGTGTAGT AACATAAAAA TGAGTTTAGG AGATTCCAGG
  Y
  GTAGTAGCAC ACGTCGATCC CAGAAATGGG ACCGGAGGCA GAAGCAGTCG GATTTCTGTG
  AGTTCATGAC CTATCTAGTC TACATAACAA GTTCTAGGGC TGCGGAGTAA GACTGTCTTA
  ACAGAACGAA CAAACGAAAG AAAGAAACGG CAGGACATAG CTGCATGTCA CCAGTGTTAA
  TTAATGCCTA GTGGGGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383949264	MGP_WTSI_11_77794886	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234580545					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383949264	MGP_WTSI_11_77794886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77872210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3325	CpG island 3325	869 bp proximal
Gm53689	predicted gene, 53689	162 bp downstream
Phf12	PHD finger protein 12	1370 bp upstream
Rr386326	regulatory region 386326	within coordinates
Rr451838	regulatory region 451838	121 bp distal
Rr451839	regulatory region 451839	965 bp distal
Rr451840	regulatory region 451840	880 bp proximal
Tssr103207	transcription start site region 103207	775 bp upstream
Tssr103208	transcription start site region 103208	1256 bp upstream
Tssr103209	transcription start site region 103209	1326 bp upstream
Tssr103210	transcription start site region 103210	1441 bp upstream
Tssr103211	transcription start site region 103211	1493 bp upstream