rs234580980 SNP Detail

Summary

• ID
  rs234580980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:38634779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGTCTG GGCCAAGGGA
  ATAAGGGATG TTTGGAATCA CATCTGAGTA CGTTTGTCCA GAAAATGTAG TGAGGATGAG
  GATTCACCAA ACAAGCAATA CCTACTGGTA ACTTATGTGT CTGGTACCAC ATTAAAAAAC
  CTATGGACAG TCAAGGTGGA TGAGAACTAA CCTGTTGAAT GTCAAATAAA GTTGCAGAAC
  Y
  CCCCCCCCCA AAAAAAAGAT AGTCTAAAGT GCTCTTACGG GCTACTTAAA AATGCCATTC
  ACTGCAATCA GGCAAGGTAG CTAATAGATA TTGACTCAAA GACGACCTTA TAATTTAAAT
  GATTAAAACA AGACCTTTAA AGTCAAGATA TCTTTGTCCA GGAAAGAAAA ACACACCAAA
  AGAAAAGAAA AATGTAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss395993942	MGP_WTSI_16_38814530	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs234580980					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395993942	MGP_WTSI_16_38814530	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38634779 () rs orientation: forward

Symbol	Name	Function Class
Gm15803	predicted gene 15803	34 bp downstream
Rr515903	regulatory region 515903	1570 bp distal
Rr515904	regulatory region 515904	1673 bp distal
Tex55	testis expressed 55	Intron