rs234581082 SNP Detail

Summary

• ID
  rs234581082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8615810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACAAAC CCACTGAATG
  TCTGGAACTG TAAGATCTAT ACTTGCAGTC AATATACAAG TACAGCTTCC AATTTTTGAC
  CTAAAGGTAC TGAGAAAACA GTAGTTCTTC AACAGCAATT GTGCTTCATA GTTGCATTTT
  CATCTTCCTC AGGGTAGGAG CAGGGCAATG GCAGTGAGCT GTCACTACAG TTAGCCAGTC
  Y
  GTCATCACAT GGTTACTATA TATAAAAACA GACTTGCTGT TGTACTTGCC CAACCATGGG
  CTTTCCTAAG TTTTGAGACT ATTAAATTGC AGTAGGCTAA GTTCTGATGC CTGCAGTTTG
  TGTACTAAAT GTGGTTTTGA CTTAAAATGT TTTCAACATG CTCTGAGATT CTCCAGACAT
  AAGGCTATCA TAACCTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463525	CHEV_5_8565810	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234581082					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8615810 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	1243 bp upstream
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	1283 bp upstream
Tssr45119	transcription start site region 45119	1303 bp upstream