rs234585284 SNP Detail

Summary

• ID
  rs234585284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74792398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAACA AAACAAAACA
  ACAAACAAAC AAGAAAGAAA GGAAGGAAGG AAGGAAGGAA GGAAGGAAGG AAGGAAGGAA
  GCATAAGTCT TTCCTAGGTC AAGATGCTCC TTTTGGAAGT GTGGTCGCTC CTTGTGGTAT
  AACCAGGGTG CTGTAAAACA ATTAGCTTCA AGACCAACAT TCCTTTACCC TCTCATATAA
  Y
  GACAAGGCTT AGAAACCCCT GCCTGCAGCT TTTCCCTGTA TAAACCCCCT TCACCTACAC
  CTCGGGGCCC ATTCTCCTAT CCCGTTACAT CAGGAAGGTG TGTGGCCCAA GTTCAAGCTT
  GAATAAAGAC TTACATGTGC TTGCATGGGA GTTATGGTTC CAGGTGGTCT CTGGGGTTTT
  CCTAGTCTGG GTACCACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394586483	MGP_WTSI_15_74750979	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234585284					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394586483	MGP_WTSI_15_74750979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74792398 () rs orientation: forward

Symbol	Name	Function Class
Gm62019	predicted gene, 62019	1721 bp downstream
Gm62792	predicted gene, 62792	within coordinates
Rr504378	regulatory region 504378	1156 bp distal
Rr504379	regulatory region 504379	399 bp distal
Rr504380	regulatory region 504380	905 bp distal
Rr504381	regulatory region 504381	within coordinates
Rr504382	regulatory region 504382	225 bp proximal
Rr504383	regulatory region 504383	768 bp proximal
Rr504384	regulatory region 504384	1864 bp proximal
Tssr131597	transcription start site region 131597	1820 bp downstream
Tssr131598	transcription start site region 131598	1781 bp downstream
Tssr131599	transcription start site region 131599	1928 bp upstream
Tssr134806	transcription start site region 134806	227 bp downstream