rs234590414 SNP Detail

Summary

• ID
  rs234590414
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51444903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAATTCA CCACTTCCAA
  GATTCAGTTT CTGAAAAGTG GCATATTTGC TTTTCCCTGA GCTGCCCCCT CTGGTGTTAA
  TTGTAAGTAT CTCAAGATGA AAAAAAAAAA TCCTGCAACT CTGAAACAAG CTCCATGAAG
  AATGCTGAAA CTCCAGATAT CACCTTAAAT CTGGTTTTGT CAGGCACTTA ATACTGGCTT
  W
  CCAATAGCTA AGTACAAAAA CTTATCAAGA TGTTCATAAA TTAGGTCATA CTATCCAGGA
  CCTATGACTG CACAACGAAA TGAAAAAGCA AAATTATAAA ACAAATCCGT TATTTTACTG
  TATAGCCTAA ATTTGTAAGT TTCTCCAAAA TGTGCTCAAA AAGCCAATGT TTACAATTTT
  TAGGTTTTGA AATGTTTAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368292314	MGP_WTSI_6_51417922	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234590414					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368292314	MGP_WTSI_6_51417922	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51444903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17402	CpG island 17402	922 bp proximal
Gm67572	predicted gene, 67572	1507 bp upstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	within coordinates
Rr379347	regulatory region 379347	392 bp upstream
Rr630212	regulatory region 630212	within coordinates
Rr630213	regulatory region 630213	1017 bp proximal
Rr630214	regulatory region 630214	1839 bp proximal
Tssr56443	transcription start site region 56443	1505 bp upstream
Tssr60939	transcription start site region 60939	1698 bp upstream
Tssr60940	transcription start site region 60940	1519 bp upstream
Tssr60941	transcription start site region 60941	1235 bp upstream
Tssr60942	transcription start site region 60942	1088 bp upstream
Tssr60943	transcription start site region 60943	978 bp upstream
Tssr60944	transcription start site region 60944	931 bp upstream
Tssr60945	transcription start site region 60945	102 bp upstream
Tssr60946	transcription start site region 60946	528 bp downstream
Tssr60947	transcription start site region 60947	1913 bp downstream
Tssr60948	transcription start site region 60948	1946 bp downstream