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rs234593086 SNP Detail
Summary
  • ID
    rs234593086
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93351835 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGGCAGGAG CTGGCTGAGG
AGGACGAGCT GACGCGGATC CGGGAACCCG ACGAGAGCAT TACCCAGAGG TGGCAGTGGC
AGCTCGAAAA CGAGGCAGAC GCCCGTCAGA ACAAGGTCTA CTCTAGGCCT AGCAGGCAGG
AGCAGAGGCT TCGCCAGGAG CTGGGGGAGC GTCAGCTCCG GGAGCAGGAG GAGCAGCGCC
K
CGACCTCCAA CAGGAGCGTC CCGCTGAGGA GGCGCGCCAG CGCAACCAGT GGGAGAGGCC
GCAGCGGGCG GAGGAGCGCC TGGAGCAGGA GCAGCGGTTC CGCGACAGGG AGGAGCAGCG
CTTCCGGGAG GAGAAGCTGC AACGAGCAGA GCTCCAGGAC AGCCTCCTAG ATGAAGAACA
GAGGCGACTC CAGGAGGAAC                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876323 MGP_WTSI_3_93248450 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234593086 SNP G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876323 MGP_WTSI_3_93248450 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93351835 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 1098 bp downstream
Tssr961 transcription start site region 961 522 bp downstream
Tssr962 transcription start site region 962 595 bp upstream
Tssr963 transcription start site region 963 632 bp upstream
Tssr964 transcription start site region 964 728 bp upstream
Tssr30347 transcription start site region 30347 1055 bp downstream
Tssr30348 transcription start site region 30348 1035 bp downstream
Tssr30349 transcription start site region 30349 1023 bp downstream
Tssr30350 transcription start site region 30350 979 bp downstream
Tssr30351 transcription start site region 30351 955 bp downstream
Tssr30352 transcription start site region 30352 905 bp downstream
Tssr30353 transcription start site region 30353 886 bp downstream
Tssr30354 transcription start site region 30354 871 bp downstream
Tssr30355 transcription start site region 30355 852 bp downstream
Tssr30356 transcription start site region 30356 798 bp downstream
Tssr30357 transcription start site region 30357 743 bp downstream
Tssr30358 transcription start site region 30358 625 bp downstream
Tssr30359 transcription start site region 30359 599 bp downstream
Tssr30360 transcription start site region 30360 569 bp downstream
Tssr30361 transcription start site region 30361 244 bp downstream
Tssr30362 transcription start site region 30362 228 bp downstream
Tssr30363 transcription start site region 30363 86 bp downstream
Tssr30364 transcription start site region 30364 14 bp downstream
Tssr30365 transcription start site region 30365 12 bp upstream
Tssr30366 transcription start site region 30366 64 bp upstream
Tssr30367 transcription start site region 30367 108 bp upstream
Tssr30368 transcription start site region 30368 125 bp upstream
Tssr30369 transcription start site region 30369 138 bp upstream
Tssr30370 transcription start site region 30370 145 bp upstream
Tssr30371 transcription start site region 30371 165 bp upstream
Tssr30372 transcription start site region 30372 178 bp upstream
Tssr30373 transcription start site region 30373 229 bp upstream
Tssr30374 transcription start site region 30374 247 bp upstream
Tssr30375 transcription start site region 30375 260 bp upstream
Tssr30376 transcription start site region 30376 286 bp upstream
Tssr30377 transcription start site region 30377 308 bp upstream
Tssr30378 transcription start site region 30378 341 bp upstream
Tssr30379 transcription start site region 30379 359 bp upstream
Tssr30380 transcription start site region 30380 439 bp upstream
Tssr30381 transcription start site region 30381 457 bp upstream
Tssr30382 transcription start site region 30382 516 bp upstream
Tssr30383 transcription start site region 30383 527 bp upstream
Tssr30384 transcription start site region 30384 536 bp upstream
Tssr30385 transcription start site region 30385 552 bp upstream
Tssr30386 transcription start site region 30386 573 bp upstream
Tssr30387 transcription start site region 30387 664 bp upstream
Tssr30388 transcription start site region 30388 690 bp upstream
Tssr30389 transcription start site region 30389 704 bp upstream
Tssr30390 transcription start site region 30390 776 bp upstream
Tssr30391 transcription start site region 30391 795 bp upstream
Tssr30392 transcription start site region 30392 813 bp upstream
Tssr30393 transcription start site region 30393 830 bp upstream
Tssr30394 transcription start site region 30394 850 bp upstream
Tssr30395 transcription start site region 30395 875 bp upstream
Tssr30396 transcription start site region 30396 924 bp upstream
Tssr30397 transcription start site region 30397 941 bp upstream
Tssr30398 transcription start site region 30398 1016 bp upstream
Tssr30399 transcription start site region 30399 1063 bp upstream
Tssr30400 transcription start site region 30400 1548 bp upstream
Tssr30401 transcription start site region 30401 1568 bp upstream
Tssr30402 transcription start site region 30402 1667 bp upstream
Tssr30403 transcription start site region 30403 1707 bp upstream
Tssr34352 transcription start site region 34352 644 bp upstream
Tssr34353 transcription start site region 34353 638 bp upstream
Tssr34354 transcription start site region 34354 587 bp upstream
Tssr34355 transcription start site region 34355 490 bp upstream
Tssr34356 transcription start site region 34356 177 bp downstream
Tssr34357 transcription start site region 34357 222 bp downstream
Tssr34358 transcription start site region 34358 274 bp downstream
Tssr34359 transcription start site region 34359 343 bp downstream
Tssr34360 transcription start site region 34360 424 bp downstream
Tssr34361 transcription start site region 34361 445 bp downstream
Tssr34362 transcription start site region 34362 494 bp downstream
Tssr34363 transcription start site region 34363 521 bp downstream
Tssr34364 transcription start site region 34364 538 bp downstream
Tssr34365 transcription start site region 34365 552 bp downstream
Tssr34366 transcription start site region 34366 612 bp downstream
Tssr34367 transcription start site region 34367 745 bp downstream
Tssr34368 transcription start site region 34368 824 bp downstream
Tssr34369 transcription start site region 34369 849 bp downstream
Tssr34370 transcription start site region 34370 863 bp downstream
Tssr34371 transcription start site region 34371 917 bp downstream
Tssr34372 transcription start site region 34372 1680 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory