rs234599195 SNP Detail

Summary

• ID
  rs234599195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62494368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGACTC CCAACATACC
  CTGGCCCATG TGGGCACATA CATAAATTTA AGACGTGTCT CCATTTAGTG GCTGGAACTA
  CTAGTTGGAG GACAGCAGAA AGCTTGACTG CTGTGATGAG ATGACTAAGT AGGAAGTGCC
  GTCAGAGTCG ATAACTGACG ATAACTGCTC CTGGCTGACT GCAGTCAAGC CCACACCGGT
  R
  GCTGGGGTTT AGGTTTAACT TGGGCTGGAC TTTTAACAAC TGCTGTACTT CTAGGTTGGG
  GATTTAAGAG TGGAAGATTG CCAACAGCTG TGGCCTCCCA TGAGGTAAGC TTTCAGCTTG
  GGATTTTAGA CCGTTTTGAT TTGAGCTAGA GTGTTCATGT ATGAGCATCA GTTTTGCCTG
  TACTCAATAC TGGTTGTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383610553	MGP_WTSI_11_62417044	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234599195					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383610553	MGP_WTSI_11_62417044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62494368 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	within coordinates
Lrrc75a	leucine rich repeat containing 75A	1342 bp downstream
Rr402627	regulatory region 402627	654 bp downstream
Rr448874	regulatory region 448874	655 bp distal
Rr448875	regulatory region 448875	within coordinates
Rr448876	regulatory region 448876	303 bp proximal
Rr448877	regulatory region 448877	1514 bp proximal
Rr448878	regulatory region 448878	1698 bp proximal
Snord49a	small nucleolar RNA, C/D box 49A	21 bp downstream
Snord49b	small nucleolar RNA, C/D box 49B	394 bp downstream
Snord65	small nucleolar RNA, C/D box 65	988 bp upstream
Tssr102048	transcription start site region 102048	656 bp downstream
Tssr102049	transcription start site region 102049	551 bp downstream
Tssr102050	transcription start site region 102050	464 bp downstream
Tssr102051	transcription start site region 102051	376 bp downstream
Tssr102052	transcription start site region 102052	350 bp downstream
Tssr102053	transcription start site region 102053	85 bp downstream