rs234602144 SNP Detail

Summary

• ID
  rs234602144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117113583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTCGCTC CTGAATGCCT
  CGTGACACTG GGAACATCCT CTCAAGGGTT AAACAGACTG ACACATGAGC TGAGAATTTA
  TTTTTTAAGC AAGATGAAAG GGGCAGCTCT AAGAAAGACA GGTCACGGGT TCCCTGATAA
  GTTTCTGAGT TCAGACAATC TCAGTTCTCA TCCACTGAGA CTCCTGTGCC CTCAGAAACC
  Y
  TCCCGGCCCA CCACAGAGGC TGTTCTAACT GGGTGCTGGG ACTGCACAAA GCCCTGCAGC
  TCACACGACT GCTGTTTCCC AAGATCAACT GGTCTCCTAT AAGCAGTTCT TGTATTTTTA
  TTCACACAGG TCTGATTAAG ATGAATTCCA ATGGAACTCA ATGTGAATCA CTTCCTGGCT
  GAAGAACTGA CCTACAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381913465	MGP_WTSI_10_116714734	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234602144					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381913465	MGP_WTSI_10_116714734	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117113583 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	within coordinates
Rr439488	regulatory region 439488	1780 bp distal
Tssr95904	transcription start site region 95904	338 bp downstream
Tssr95905	transcription start site region 95905	270 bp downstream
Tssr95906	transcription start site region 95906	216 bp downstream
Tssr95907	transcription start site region 95907	183 bp downstream
Tssr95908	transcription start site region 95908	2 bp downstream
Tssr95909	transcription start site region 95909	38 bp upstream
Tssr95910	transcription start site region 95910	173 bp upstream
Tssr95911	transcription start site region 95911	303 bp upstream
Tssr95912	transcription start site region 95912	398 bp upstream
Tssr95913	transcription start site region 95913	458 bp upstream
Tssr99410	transcription start site region 99410	226 bp upstream
Tssr99411	transcription start site region 99411	148 bp upstream
Tssr99412	transcription start site region 99412	42 bp upstream
Tssr99413	transcription start site region 99413	within coordinates
Tssr99414	transcription start site region 99414	75 bp downstream
Tssr99415	transcription start site region 99415	158 bp downstream
Tssr99416	transcription start site region 99416	208 bp downstream
Tssr99417	transcription start site region 99417	320 bp downstream
Tssr99418	transcription start site region 99418	334 bp downstream
Tssr99419	transcription start site region 99419	349 bp downstream
Tssr99420	transcription start site region 99420	421 bp downstream
Tssr99421	transcription start site region 99421	495 bp downstream
Tssr99422	transcription start site region 99422	1227 bp downstream