rs234608640 SNP Detail

Summary

• ID
  rs234608640
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72307685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATAGCGG ATCTCCGCGC
  GTGGGGAAAT GGGCTTGGAG TTTGGCTTGC CTTGGTGCAT ATTTGGACAC CTGACTGGAG
  GAATCGACTT CACCTCTCCG CACTTCAGTT TTCTTACTTA TTTAAGTGAT GGTAACGTCG
  CTGCAAAGAA TTAAGCGAAC ATCAGTACCA AATCTGCCGT CAAAGAACAC TCACCGTAAA
  T
  AGAATTAAGA GTTACATCTG CCAAAAAAGT TCACCCCAGG CACGACCTTT GGCTCTCCTT
  TTTTGTGTGT CTTTTCCATC GAAGACATAC TTGCCTGGTG AATGACTGAC CGTTGGCCTG
  TCCTGGCTTG TTAAAGATTA GCCTCTTTTC CTGATGGCTT TTGATTGACT GCCTCCCCTG
  AGGCTGACAT GGAGTTAAAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342603	CHEV_2_72315398	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234608640					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72307685 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	within coordinates
Cpgi11756	CpG island 11756	111 bp distal
Rr397036	regulatory region 397036	1275 bp downstream
Rr558979	regulatory region 558979	1172 bp distal
Rr558980	regulatory region 558980	within coordinates
Rr558981	regulatory region 558981	785 bp proximal
Tssr18351	transcription start site region 18351	1341 bp downstream
Tssr18352	transcription start site region 18352	1129 bp downstream
Tssr18353	transcription start site region 18353	1117 bp downstream
Tssr18354	transcription start site region 18354	1082 bp downstream