rs234616107 SNP Detail

Summary

• ID
  rs234616107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150629099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACGCTGG TCAAGGACCG
  CAATGTGGCC ACGCCCCGCG ACTACTTCTT CGCTCTGGCA CACACAGTTC GCGACCACCT
  AGTGGGCCGC TGGATCCGCA CGCAGCAGCA TTACTATGAG CGGGACCCCA AGGTGAGCAG
  CCCGCCCTCC CTGGGAGGGA GACCGAGCCC AGGGCAGGGC GGGTCCCGCC CCCCCCCCCC
  Y
  CCCAAGTATC GCCCACGGGC CTGGTCCCTG TTGCACCACG GTCACCTGCG ACCAATGAAG
  AGACAGTAGA GTTATGCATC CTCCTTCGAA GGACCGGTGC ATACCCTCTC TTTCGGGTTT
  CGTTTTAATT GAGACCCATC CCCCTGCTCC CCGGCCCGCA GTCCCCAGTC CCTAAGTATG
  GCTTTGAGTG GCCCCTTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
ss356123291	MGP_WTSI_2_150612915	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
rs234616107					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356123291	MGP_WTSI_2_150612915	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150629099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	within coordinates
Gm30141	predicted gene, 30141	485 bp upstream
Gm57834	predicted gene, 57834	1440 bp upstream
Pygb	brain glycogen phosphorylase	Intron
Rr397385	regulatory region 397385	333 bp downstream
Rr567101	regulatory region 567101	434 bp distal
Rr567102	regulatory region 567102	1598 bp proximal
Tssr20709	transcription start site region 20709	385 bp downstream
Tssr20710	transcription start site region 20710	362 bp downstream