rs234620106 SNP Detail

Summary

• ID
  rs234620106
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142416901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATTTGCA AGAACCCTGG
  CCTTATTCAG AAACCGTAGA GACAGAATTG GTGAGTGTAA AGGGACATTT GAAAGAGCTG
  TGTGCACAAC ACGTCCCTCC TCTGTGCTAA GGTCCGGTCC TCTCTGCTCC TCTCATCAGT
  ACAGAGGATG AAGGGCTCAT CCTTTGAGCT GCGTCTGAGG GCGTCTAAAC AGAGGAGCCC
  W
  CTGCTGACTT TCCTTTTACG TATTTCCTAA ATGTGTACTG GGGGAACTTT GAACAGTCAG
  AATAAGGCGG AAGCCAGGAC AGAGTGCAAA TACAATCCTG CGTATGTGTG TGTACACAAG
  ATGCACGTGG CACACGTGTG GGTACATGTT CCCGTGGGTG CATGTGTGAG AGCATGTGCA
  CACACACATA TAGGCCAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322044820	CHEV_6_142419695	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234620106					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142416901 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Tssr63950	transcription start site region 63950	1623 bp downstream
Tssr63951	transcription start site region 63951	1638 bp downstream
Tssr63952	transcription start site region 63952	1669 bp downstream
Tssr63953	transcription start site region 63953	1722 bp downstream
Tssr63954	transcription start site region 63954	1785 bp downstream
Tssr63955	transcription start site region 63955	1814 bp downstream
Tssr63956	transcription start site region 63956	1900 bp downstream