rs234625503 SNP Detail

Summary

• ID
  rs234625503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66416734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCTCCT CCTAAAGAGT
  GGGTTTGGAT TGGAAAAGAA AAGTCCATGC CTGATTGTCA CAGGATAGCC TACTGGCAGG
  AACACCATTT TGCAATCAGA GAGGAGAGCT GAGAGAAGCC TGTTTGCTTC CTTGGGGATG
  ACAGGAAGAA CAGCCCTGGG ATGTGTTCCC ATTGGTTAAC CCAGGACAGA ATGCCTTCAA
  Y
  GTCACCATCG AAACTGCTGT AATGGTACCC AAAGTAACAA CAGCCGTACC CAGTTTTGAC
  ACCCGTATAA ACTAGTCTCC ATGACTTTCT GGCTAGGGAA CAACAGCCTG GGAACACACA
  TCTCCCAGAA AAACGCCAAA ACGTCTTGGC GTGTGCACGT GCACGTGTGT TACCAGACTA
  TTAATTTAAA AACCTAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398792977	MGP_WTSI_17_66459079	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234625503					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398792977	MGP_WTSI_17_66459079	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66416734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9425	CpG island 9425	1715 bp proximal
Gm65422	predicted gene, 65422	within coordinates
Rr370304	regulatory region 370304	1733 bp upstream
Rr405415	regulatory region 405415	1380 bp upstream
Rr529887	regulatory region 529887	853 bp proximal
Rr529888	regulatory region 529888	1735 bp proximal
Rr529889	regulatory region 529889	1917 bp proximal
Tssr145594	transcription start site region 145594	1790 bp upstream
Tssr145595	transcription start site region 145595	1866 bp upstream
Tssr149109	transcription start site region 149109	1777 bp downstream
Washc1	WASH complex subunit 1	1806 bp upstream