rs234645979 SNP Detail

Summary

• ID
  rs234645979
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101166836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTCTGT GCATCCGCTG
  GTAGGATCCT CCACTCTGTC CAATTAGCTT GCGGCTGCTG CTGGGTTCTG AGTGTTCTCT
  TACAAAATGA CAAGGTTAGG GGGCTGGAGA GATGGCTCAG GGGCTAAGAG CACCCATGTG
  GCAGTTTGCA ACTGTCTGTA ACTCCTGTTC CAGGGGGGAT CTGACACCCT CACACGGACA
  W
  ACATGCAGGC AAAACACCTA TTGGCATGGA AAATGAAAAT AAATGACCGG GTTAGCTGAG
  AAATTCCTTT TGAGAGTTGT CTTTTCTCCA GTCCAGAGAC TGCTCTCTGG ATCTTCCTGC
  TCAGTTCCTC GCCTCCCTTC AATATATGGT ATTTAAGGTT TTACTTTTTT TTGCGTTTTC
  AATTGTTTTT AATTGTATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395192965	MGP_WTSI_15_101099386	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234645979					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395192965	MGP_WTSI_15_101099386	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101166836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7777	CpG island 7777	1707 bp distal
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	995 bp downstream
Rr510002	regulatory region 510002	383 bp distal
Rr510003	regulatory region 510003	1747 bp distal
Tssr133215	transcription start site region 133215	1843 bp downstream
Tssr133216	transcription start site region 133216	1812 bp downstream
Tssr133217	transcription start site region 133217	1709 bp downstream
Tssr133218	transcription start site region 133218	1081 bp downstream
Tssr133219	transcription start site region 133219	1059 bp downstream
Tssr133220	transcription start site region 133220	964 bp downstream
Tssr133221	transcription start site region 133221	904 bp downstream
Tssr133222	transcription start site region 133222	432 bp upstream
Tssr133223	transcription start site region 133223	1121 bp upstream
Tssr133224	transcription start site region 133224	1164 bp upstream
Tssr133225	transcription start site region 133225	1175 bp upstream
Tssr133226	transcription start site region 133226	1196 bp upstream
Tssr133227	transcription start site region 133227	1204 bp upstream
Tssr133228	transcription start site region 133228	1222 bp upstream
Tssr133229	transcription start site region 133229	1233 bp upstream
Tssr133230	transcription start site region 133230	1311 bp upstream
Tssr133231	transcription start site region 133231	1343 bp upstream
Tssr133232	transcription start site region 133232	1362 bp upstream
Tssr133233	transcription start site region 133233	1390 bp upstream
Tssr133234	transcription start site region 133234	1408 bp upstream
Tssr133235	transcription start site region 133235	1441 bp upstream
Tssr133236	transcription start site region 133236	1490 bp upstream
Tssr133237	transcription start site region 133237	1512 bp upstream
Tssr133238	transcription start site region 133238	1545 bp upstream
Tssr133239	transcription start site region 133239	1587 bp upstream
Tssr133240	transcription start site region 133240	1679 bp upstream
Tssr133241	transcription start site region 133241	1696 bp upstream
Tssr133242	transcription start site region 133242	1704 bp upstream
Tssr133243	transcription start site region 133243	1730 bp upstream
Tssr133244	transcription start site region 133244	1751 bp upstream
Tssr133245	transcription start site region 133245	1795 bp upstream
Tssr133246	transcription start site region 133246	1820 bp upstream
Tssr133247	transcription start site region 133247	1908 bp upstream
Tssr133248	transcription start site region 133248	1928 bp upstream
Tssr136545	transcription start site region 136545	1344 bp downstream
Tssr136546	transcription start site region 136546	1466 bp downstream
Tssr136547	transcription start site region 136547	1542 bp downstream
Tssr136548	transcription start site region 136548	1552 bp downstream
Tssr136549	transcription start site region 136549	1586 bp downstream
Tssr136550	transcription start site region 136550	1692 bp downstream
Tssr136551	transcription start site region 136551	1768 bp downstream