rs234653615 SNP Detail

Summary

• ID
  rs234653615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAATGTA ATGTTGTGAG
  TAACCCTTGG ACATTTTATG TCTTCCTCGT AAGGCACAGT GCCTTGCTTA GCAATTGTTT
  TGTCATGCCT TTTCGTGTCT TGAAGTGGAC ACATTTATTT ATTCATGTAT TTTTACAAAT
  AACAAAAAAT AAAAACGTCT GTTAAAAAAA AAATCCCGTG CTTAAGTTTG TTTTATATAT
  Y
  TCAATATTTT ATTCTTCCAT CGTATTGAAG GTGTCAGGAA TGCTTAAGAA ACCATGTTTC
  CTGCAGCAAC AGCTACTAGC TGGAGTCTCC CTTGTTTTTG TCAAGAAGGC ACACTTGATG
  CCTTTCAAAG TCTCTGCAGG ATTTTTCTGT CAGAGAATCC CTCTCTAACA TATTCTTTCC
  CCCAAGGAAC AGCTTGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847548	MGP_WTSI_5_91335002	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234653615					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847548	MGP_WTSI_5_91335002	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053835 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	38 bp downstream
Tssr47227	transcription start site region 47227	1902 bp downstream
Tssr47228	transcription start site region 47228	1839 bp downstream
Tssr47229	transcription start site region 47229	1818 bp downstream
Tssr47230	transcription start site region 47230	1793 bp downstream
Tssr47231	transcription start site region 47231	1763 bp downstream
Tssr47232	transcription start site region 47232	1616 bp downstream
Tssr47233	transcription start site region 47233	1566 bp downstream
Tssr47234	transcription start site region 47234	1531 bp downstream
Tssr47235	transcription start site region 47235	773 bp downstream
Tssr47236	transcription start site region 47236	734 bp downstream
Tssr47237	transcription start site region 47237	714 bp downstream
Tssr47238	transcription start site region 47238	655 bp downstream
Tssr47239	transcription start site region 47239	650 bp downstream
Tssr47240	transcription start site region 47240	631 bp downstream
Tssr47241	transcription start site region 47241	602 bp downstream
Tssr47242	transcription start site region 47242	577 bp downstream
Tssr47243	transcription start site region 47243	559 bp downstream
Tssr47244	transcription start site region 47244	520 bp downstream
Tssr47245	transcription start site region 47245	503 bp downstream
Tssr47246	transcription start site region 47246	449 bp downstream
Tssr47247	transcription start site region 47247	395 bp downstream
Tssr47248	transcription start site region 47248	336 bp downstream
Tssr47249	transcription start site region 47249	275 bp downstream
Tssr47250	transcription start site region 47250	137 bp downstream
Tssr47251	transcription start site region 47251	72 bp downstream
Tssr47252	transcription start site region 47252	20 bp downstream
Tssr51812	transcription start site region 51812	1749 bp upstream
Tssr51813	transcription start site region 51813	1732 bp upstream
Tssr51814	transcription start site region 51814	758 bp upstream
Tssr51815	transcription start site region 51815	712 bp upstream
Tssr51816	transcription start site region 51816	679 bp upstream