rs234665489 SNP Detail

Summary

• ID
  rs234665489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66136244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTATCTTC TGTGACTTAG AAAACCTTGG
  AAGCCCTAAG ACTTGTGGAA CCAGCCCATA ATAAACTAAT AAATAAAGGC ATCTACTATT
  CAGTGGCTGG CTTTTGTTTT GTGAACTTTC CAGAAATGAT TACCCCACCA AGAGTCTCAG
  Y
  CCACGGAGAG CATCTCAAAA GAGCCCTAGG ACCTTTTAGG TGGTCGAATT AAGAGGTTTG
  TGCCAAATCA ACTTTACTTC TCAAAAAGGA ATTTCGAAGG CAAGGCTGTA CTTGAAACCA
  TGGCACAGTG CACACAAATA AAACTCGGTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658938	CHEV_18_66162827	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234665489					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66136244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	243 bp distal
Lman1	lectin, mannose-binding, 1	538 bp upstream
Rr353056	regulatory region 353056	43 bp distal
Rr355117	regulatory region 355117	758 bp proximal
Rr405704	regulatory region 405704	325 bp downstream
Tssr153727	transcription start site region 153727	536 bp upstream